PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s927281g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 460aa    MW: 51566.1 Da    PI: 5.0629
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s927281g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.57.1e-2683147170
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                        r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i wk
  PDK_30s927281g003  83 RYDNSLGLLTKKFINLLKRAQDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRICWK 147
                        689*******************************...99..***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-2681147IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.9E-1783146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-3183148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-2385147IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.80E-30171265No hitNo description
SuperFamilySSF1440745.75E-20173262No hitNo description
PfamPF164217.8E-18202262IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEIMLKQKLK QENTEAAKSS EWTTSPGCAE MIIRPLQTPV SAKGGRACGR LKVAKYNKSG  60
PQTLVSNAGY PSGNPVTPVG TCRYDNSLGL LTKKFINLLK RAQDGILDLN KAAETLEVQK  120
RRIYDITNVL EGIGLIEKKL KNRICWKWQI NKEYFDRGLD DSRPAEIDDA VSSLQVEVES  180
LSMKDHNLEN YIRLILIPSL KLIRFCSEMQ QKLRDFCEDE NNQKWLYVTE DDIKGIPCFK  240
NETLIAIKAP HGTTLEVPDP DEVGRGMEGL IEGILRVSEY LFIYDYFLSQ FEEKFEELSG  300
MVVPPSLPPI SNSRPAETAA STTVTEGCRG KVLEVQDPRR MCTYLNSSQD LVGGMMKIVP  360
SDVDIDADYW LLSDADVSIT DMWGTSRILF LVLACSFFFS LCSQKIRSWK SLKPITAEVP  420
WDLGGRFDAN FMLGSTSIPW PQTPSSSVAE VLPSGNSTQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-2378147172PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809833.10.0PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-102E2FB_ARATH; Transcription factor E2FB
TrEMBLF5A6651e-171F5A665_COCNU; E2F protein
STRINGVIT_06s0080g01110.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-97E2F transcription factor 1